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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaagctgattgacacttgggactcatgcgactgtaccatcgcgcatgcccacgttgtgtaccccgtgcgtttgctcatcggctgtgctcccgtc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP00001
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49463346|gb|BP091259.1|BP091259
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
EST: gi|6547352|gb|AV393136.1|AV393136
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
EST: gi|23364946|gb|BU652766.1|BU652766
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
EST: gi|15692454|gb|BI716759.1|BI716759
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCA
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCA
EST: gi|49462877|gb|BP090790.1|BP090790
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
EST: gi|239841472|gb|GR283329.1|GR283329
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
EST: gi|6541675|gb|AV387459.1|AV387459
EST:     AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAG                         GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC
genomic: AGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaag ... gctgcgccagGTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCAACGAGATGCCCGACGGCCTGTACAAGAGCCCCGACGGCAAGgtgagtcaagctgattgacacttgggactcatgcgactgtaccatcgcgcatgcccacgttgtgtaccccgtgcgtttgctcatcggctgtgctcccgtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgc