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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACAACTGCTCCGAGCACGCCAGCCGCATGTCGGCCATGGAGAACTCCACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacgagtgatcaaacaacgacttaagaaggttgagggagggacaacaggcagccgacggcgatttaatggcaaggcatggcttgcgcgggtctg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97956
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364483|gb|BU652303.1|BU652303
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|10779349|gb|AV636029.1|AV636029
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|49461998|gb|BP089911.1|BP089911
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|6545169|gb|AV390953.1|AV390953
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|10778216|gb|AV634896.1|AV634896
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|239841872|gb|GR283729.1|GR283729
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|239841871|gb|GR283728.1|GR283728
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
EST: gi|22052088|gb|BQ810039.1|BQ810039
EST:     ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCG                         CAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC
genomic: ACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacg ... cccctcgcagCAAGCGCCAGGCCACCATCACCACCGAGCTCATTGAGATCATTGCCGGCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAACAACTGCTCCGAGCACGCCAGCCGCATGTCGGCCATGGAGAACTCCACCAAGAGCGCGGGCGAGATGCTGGGCAAGCTGACGCTCGAGTACAACCGgtgagttacgagtgatcaaacaacgacttaagaaggttgagggagggacaacaggcagccgacggcgatttaatggcaaggcatggcttgcgcgggtctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgggtct