1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTACCTGTCCTTCGCCGCCGGCATGAACGGGCTGGCGGGTCCGCTGCACGGCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAGgtgggttacattcatggtggccaaggtgggggttggaagtacggttccagcccaaagtaaaccaaaccaagccaaactgtcggagcacaggcaggggggt...
species | Chlamydomonas reinhardtii |
transcript | EDO96721 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAG CTGGGCCCCTCTCCCGGCAGGGACGCTGTTCGCAAGTACGTGGAGGACACGEST: gi|161798448|gb|FC085724.1|FC085724
genomic: GCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAGgtgggttaca ... ccctccgcagCTGGGCCCCTCTCCCGGCAGGGACGCTGTTCGCAAGTACGTGGAGGACACG
EST: GCCTGGCCAACCAGGAGGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAG CTGGGCCCCTCTCCCGGCAGGGACGCTGTTCGTAAGTACGTGGAGGACACGEST: gi|15701461|gb|BI725766.1|BI725766
genomic: GCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAGgtgggttaca ... ccctccgcagCTGGGCCCCTCTCCCGGCAGGGACGCTGTTCGCAAGTACGTGGAGGACACG
EST: GCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAG CTGGGCCCCTCTCCCGGCAGGGACGCTGTTCGCAAGTACGTGGAGGACACG
genomic: GCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAGgtgggttaca ... ccctccgcagCTGGGCCCCTCTCCCGGCAGGGACGCTGTTCGCAAGTACGTGGAGGACACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCTGTCCTTCGCCGCCGGCATGAACGGGCTGGCGGGTCCGCTGCACGGCCTGGCCAACCAGGAAGTGCTGCGCTGGCTCAAGGACCTGGTGGCCAAGgtgggttacattcatggtggccaaggtgggggttggaagtacggttccagcccaaagtaaaccaaaccaagccaaactgtcggagcacaggcaggggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcgga