Sequence
atgc intronic sequence ATGC exonic sequenceGGGCACGCCCGACTACATCGCGCCCGAGGTGCTGCTGAAGAAGGGCTACGGCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTGgtgagttgccggcgtagccacatttggcgcacggacttgtgcgccgtgggctgctgtgaattgcatgggcagctacggctcggggattgccgagtgcatgcgcagagcgtgacaggaccctattgcatatgcccgcag
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP09781 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP09781 (Chlamydomonas reinhardtii), 5'ss of exon 8
lower sequence: PP1S11_341V6.1 (Physcomitrella patens), 5'ss of exon 7
GGGCACGCCCGACTACATCGCGCCCGAGGTGCTGCTGAAGAAGGGCTACGGCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTGgtgagttgccggcgtagcca--catttggcgc-acggacttgtgcgccgtgg---gctgctgtgaattgc---atgggcagctacggctcggggattgccgagtgcatgcgcagagcgtgacaggaccctattgcatat-gcccgcag---
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------------------------------------------------------------------GTGGTCGCTTGGAGCAATTATGTTTGAGATGCTGGTTGGCTATCCACCGTTCTATTCAGATGACCCTATGAATACCTGCAGAAAGgtatgttaccgtcttttgccaaatgtctagttcttatttgcatcgaactatcatcaatcgcatcggatgatgtttgtttattaactttagtttttagtga
upper sequence: EDP09781 (Chlamydomonas reinhardtii), 5'ss of exon 8
lower sequence: PP1S22_423V6.1 (Physcomitrella patens), 5'ss of exon 6
--------------GGGCACGCCCGACTACATCGCGCCCGAGGTGCTGCTGAAGAAGGGCTACGGCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTGgtgagttgccggcgtagccacatttgg-cgcacggacttgtgcgccgtgggctgctgtgaattgcatgggcagctacggctcggggattgccgagtgcatgcgcaga-gcgtgacaggaccctatt--------gcatatgcccgcag
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GCATATTCCACAGTTGGTACTCCGGACTACATTGCGCCCGAAGTGCTGTTGAAAAAAGGCTATGGCATGGAGTGTGACTGgtgaatttttgccttcacttgttatattattcaatgaattttctcttgaatagaaactcgaatgttttgcaaggtggatagtagactacc--ggattatagctgtggttacagaatgtcttacatggaaaggacatttgaataaattactggatttgatttaatgatggaatgtttctacag
upper sequence: EDP09781 (Chlamydomonas reinhardtii), 5'ss of exon 8
lower sequence: EFJ07946 (Selaginella moellendorffii), 5'ss of exon 6
--------------GGGCACGCCCGACTACATCGCGCCCGAGGTGCTGCTGAAGAAGGGCTACGGCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTGgtgagttgccggcgtagccacatttggcgcacggacttgtgcgccgtgggctgctgtgaattgcatgggcagctacggctcggggattgccgagtgcatgcgcagagcgtgacaggaccctattgcatatgcccgcag
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GCCTTTTCAACGGTTGGTACACCCGATTACATTGCTCCGGAAGTGTTGCTTAAGAAGGGATACGGCATGGATTGCGACTGgtaagaac-aacttcgttcattt---agttgctatcaagtttccttcag---------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15696760|gb|BI721065.1|BI721065EST: GCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTG GTGGGGTACCCGCCGTTCTACTCGGACGAGCCGCTGACCACATGCCGCAAG
genomic: GCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTGgtgagttgcc ... atgcccgcagGTGGGGTACCCGCCGTTCTACTCGGACGAGCCGCTGACCACATGCCGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCACGCCCGACTACATCGCGCCCGAGGTGCTGCTGAAGAAGGGCTACGGCATGGAGTGCGACTGGTGGTCGCTGGGCGCAATCATGTTTGAGATGCTGgtgagttgccggcgtagccacatttggcgcacggacttgtgcgccgtgggctgctgtgaattgcatgggcagctacggctcggggattgccgagtgcatgcgcagagcgtgacaggaccctattgcatatgcccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG