1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGCGGCAGCTACATGCCCGGTGACATTGAGCCCAACTTGTGCAACGCCGGCTCTGACGTCTGGCCGGACTGCCAAGGGTTCGGCCGTGTGGAGGTGCAGgtgagcaggggcctgcgcaagggcctggtcggttcggggcttgcgggctggggactggaggatggtcgccagcactgctgacgccgtccgcccatccagcgtccacgctccgacgcggacacactggctgtacaacaccagtcgccatctgcccaccccggaactccaacag
species | Chlamydomonas reinhardtii |
transcript | EDP07884 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTCTGACGTCTGGCCGGACTGCCAAGGGTTCGGNCGTGTGGAGGTGCAG GTGCCGGACGCTGGCGGCAATCTCATCTEST: gi|10773359|gb|AV624182.1|AV624182
genomic: GCTCTGACGTCTGGCCGGACTGCCAAGGGTTCGGCCGTGTGGAGGTGCAGgtgagcaggg ... actccaacagGTGCCGGACGCTGGCGGCAATCTCATCT
EST: CCGTGTGGAGGTGCAG GTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTGTGCCCGGCCTTCEST: gi|10773468|gb|AV624291.1|AV624291
genomic: CCGTGTGGAGGTGCAGgtgagcaggg ... actccaacagGTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTGTGCCCGGCCTTC
EST: GTTCGGCCGTGTGGAGGTGCAG GTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTGTGCCCGGCCTTCEST: gi|10770519|gb|AV621344.1|AV621344
genomic: GTTCGGCCGTGTGGAGGTGCAGgtgagcaggg ... actccaacagGTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTGTGCCCGGCCTTC
EST: GTTCGGCCGTGTGGAGGTGCAG GTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTGTGCCCGGCCTTC
genomic: GTTCGGCCGTGTGGAGGTGCAGgtgagcaggg ... actccaacagGTGCCGGACGCTGGCGGCAATCTCATCTGGGCGCCCCTGTGCCCGGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCGGCAGCTACATGCCCGGTGACATTGAGCCCAACTTGTGCAACGCCGGCTCTGACGTCTGGCCGGACTGCCAAGGGTTCGGCCGTGTGGAGGTGCAGgtgagcaggggcctgcgcaagggcctggtcggttcggggcttgcgggctggggactggaggatggtcgccagcactgctgacgccgtccgcccatccagcgtccacgctccgacgcggacacactggctgtacaacaccagtcgccatctgcccaccccggaactccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG