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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCTGGACCTGAACCGCATGACCATGGCGGAGCTGTACAAGCACTACGACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcggcctggggcggggcgtgggggcatggggctggggggagaggggctgggaggctgggagggggttgagagggggtcagtgaacggcggaggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10772550|gb|AV623373.1|AV623373
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCT
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCT
EST: gi|6544442|gb|AV390226.1|AV390226
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: gi|23365054|gb|BU652874.1|BU652874
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: gi|23363461|gb|BU651281.1|BU651281
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: gi|10768527|gb|AV619352.1|AV619352
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: gi|49461921|gb|BP089834.1|BP089834
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: gi|49464632|gb|BP092545.1|BP092545
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCC
EST: gi|23367839|gb|BU655657.1|BU655657
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: gi|49462669|gb|BP090582.1|BP090582
EST:     ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC                         CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCCTGGACCTGAACCGCATGACCATGGCGGAGCTGTACAAGCACTACGACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcggcctggggcggggcgtgggggcatggggctggggggagaggggctgggaggctgggagggggttgagagggggtcagtgaacggcggaggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagtga