Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgctggatgcaggggcggggacgtcgtaatagacgcacgggcgccatccagggtcgataggcatagcaatgatgtaaaaaaggccggggaacgcttgcgggaccggtgccctgtaggtgcagctaaacggttggtgctgactcgtgcctctgcaccttgcgtgcgcgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161819692|gb|FC110730.1|FC110730
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
EST: gi|8513770|gb|BE121665.1|BE121665
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCC
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCC
EST: gi|14235024|gb|BG853840.1|BG853840
EST:     CTACTGGGCATTGGCATGAAGGACAAACGTGG-CACGCACCTGGCGGCGG                         GCTTGGGCGCCG
genomic: CTACTGGGCATTGGCATGAAGGACAA-CGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCG
EST: gi|9210083|gb|BE336998.1|BE336998
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
EST: gi|15705113|gb|BI729402.1|BI729402
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCA
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCA
EST: gi|8400964|gb|BE056598.1|BE056598
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCG
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCG
EST: gi|8933158|gb|BE227919.1|BE227919
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGNGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG                         GCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG
genomic: GCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGGgtgagccgct ... cgcgctgcagGCTTGGGCGCCGGCTTCGTCGCGGTATGCATTGGCTCGCCCGTGGATGTGG