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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCACGACAGCATCCAGTGGTGGATGCCGCTGTGCCAGTGGGGCGCTGAGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAGgtgagcaacgtaccgggccgggcctcccaacccccgtgcccctcgcagttgttacacttcggatcccagtgccgagccaacggccaactgcaccatatttatgtccgcggtatgccgtccacctgcactgtactctgcaccacccccatccccgcgtcacctgcccaatcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01561
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6545166|gb|AV390950.1|AV390950
EST:     AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAG                         GTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
genomic: AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAGgtgagcaacg ... ccaatcacagGTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
EST: gi|8514445|gb|BE122340.1|BE122340
EST:     AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAG                         GTCTGCCAGATGACCAGCTTCGAGCGCATCCTGNGCGCCAATCCCGACATC
genomic: AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAGgtgagcaacg ... ccaatcacagGTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
EST: gi|10768962|gb|AV619787.1|AV619787
EST:     AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAG                         GTCTGCCAGAT-ACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
genomic: AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAGgtgagcaacg ... ccaatcacagGTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
EST: gi|161818078|gb|FC100302.1|FC100302
EST:     AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAG                         GTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
genomic: AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAGgtgagcaacg ... ccaatcacagGTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
EST: gi|161822319|gb|FC111095.1|FC111095
EST:     AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAG                         GTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC
genomic: AGTTCTGTGACACGCACCAGTGGCGCTTCGCGTGCATCATTGCCCTGGAGgtgagcaacg ... ccaatcacagGTCTGCCAGATGACCAGCTTCGAGCGCATCCTGGGCGCCAATCCCGACATC