1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGACTGGGACCTGCGCAAGACGCAGCCGTACGATGCGTACGGCAAGATGCAGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaagggcgggggcattggttggcagacatggtctgtgtgtgcggtcagccagccactgcggtatgacaagagcgttcgttggggagatgcggggcc...
species | Chlamydomonas reinhardtii |
transcript | EDP00001 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|6547352|gb|AV393136.1|AV393136
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|6544724|gb|AV390508.1|AV390508
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|23364946|gb|BU652766.1|BU652766
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|10780943|gb|AV637623.1|AV637623
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|15692454|gb|BI716759.1|BI716759
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|49462877|gb|BP090790.1|BP090790
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|10769258|gb|AV620083.1|AV620083
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTCEST: gi|239841472|gb|GR283329.1|GR283329
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
EST: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTG GTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
genomic: AGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaaggg ... cccctcgcagGTGCGGCTGCAGGAGATGCGCGAGTCGCTGCGCATCATCTACCAGTGCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTGGGACCTGCGCAAGACGCAGCCGTACGATGCGTACGGCAAGATGCAGTTCAACGTGCCCATCGCCGGCCACGGCGACTGCTACGACCGCTACCTGgtgagaagggcgggggcattggttggcagacatggtctgtgtgtgcggtcagccagccactgcggtatgacaagagcgttcgttggggagatgcggggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcgtt