1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GACGCCATCAACGGCTGGGAGATCGACCGCGCCATGGAGCAGGCCATGGACGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAGgtgaggcggcggggatgtgctgcgaggggcactgacagctgggaatcaatgggttctcgaattgtggaatgcggttgggcaagtgactgggcaagggtgt...
species | Chlamydomonas reinhardtii |
transcript | EDO98445 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAG GTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACAEST: gi|161808494|gb|FC097865.1|FC097865
genomic: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAGgtgaggcggc ... ttccggccagGTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACA
EST: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAG GTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACAEST: gi|161797384|gb|FC085950.1|FC085950
genomic: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAGgtgaggcggc ... ttccggccagGTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACA
EST: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAG GTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACAEST: gi|14238496|gb|BG857312.1|BG857312
genomic: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAGgtgaggcggc ... ttccggccagGTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACA
EST: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAG GTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACA
genomic: CGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAGgtgaggcggc ... ttccggccagGTGAGCGGCGCCGTGTGGCCCTGTGCCGGCTGCTGCTGTCCGCGCCCGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGCCATCAACGGCTGGGAGATCGACCGCGCCATGGAGCAGGCCATGGACGCACTGCGCTGCCCGCCGCCCGACGCCCTGGTCAAGAACCTGTCGGGAGgtgaggcggcggggatgtgctgcgaggggcactgacagctgggaatcaatgggttctcgaattgtggaatgcggttgggcaagtgactgggcaagggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgact