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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGACATGGGCTACAGCCCCATGGACATCATCACCACCGTGTTCCGAGTGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggcggcggcggcgggtttagggccacaccggttgcacggcgtgcgctgggatcgggagtgctgagctgcctgtggcctgataaggcaccgtgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98380
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694810|gb|BI719115.1|BI719115
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|15698626|gb|BI722931.1|BI722931
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|15704436|gb|BI728741.1|BI728741
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|15697305|gb|BI721610.1|BI721610
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|16433667|gb|BI998893.1|BI998893
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|16433705|gb|BI998931.1|BI998931
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|22058604|gb|BQ813037.1|BQ813037
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|15698699|gb|BI723020.1|BI723020
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
EST: gi|8287553|gb|BE025112.1|BE025112
EST:     TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGG                         GAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG
genomic: TGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggc ... cccgccgcagGAGATTGGCTTCTGCCACATGCGCGTGTCGGAGGGCGTCAACTCGCGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGGACATGGGCTACAGCCCCATGGACATCATCACCACCGTGTTCCGAGTGGTGCGCAACGCCGACATCCCCGAGTTCCTCAAGCTGGAGTACCTCAGGgtgaggcggcggcggcggcgggtttagggccacaccggttgcacggcgtgcgctgggatcgggagtgctgagctgcctgtggcctgataaggcaccgtgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt