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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGATgtgagtggcacctggggctaggcgttgcgcattgccaaccacgatatgcacttctggaacacggcaagtagccgcacctctgaccctagcccccctttccctcgcctgatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98063
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161792230|gb|FC079209.1|FC079209
EST:     TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATNGGGCAGGGCTATGGAT                         CCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATC
genomic: TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGATgtgagtggca ... cctgatgcagCCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATC
EST: gi|9441241|gb|BE441845.1|BE441845
EST:     TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGAT                         CCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATCAGCTCGCCGC
genomic: TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGATgtgagtggca ... cctgatgcagCCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATCAGCTCGCCGC
EST: gi|161811521|gb|FC098025.1|FC098025
EST:     TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGAT                         CCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATCAGCTCGCCGC
genomic: TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGATgtgagtggca ... cctgatgcagCCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATCAGCTCGCCGC
EST: gi|10773877|gb|AV624700.1|AV624700
EST:     TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGAT                         CCGGTCCGCGG
genomic: TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGATgtgagtggca ... cctgatgcagCCGGTCCGCGG
EST: gi|23363248|gb|BU651068.1|BU651068
EST:     TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGAT                         CCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATCAGCTCGCCGC
genomic: TGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGATgtgagtggca ... cctgatgcagCCGGTCCGCGGCGTGCCTCTGACGCCGCGCTGCGCGCCATCAGCTCGCCGC