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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagctcgggttctgcaaagtggcttcactttgatgccaatctaatcaatctaattcagcactagtgatgttaggacagcacattaaacgcgctaccggacgctgataccgccgcccccaacctctcgtccgccaaccgctgcccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98046
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10774172|gb|AV624995.1|AV624995
EST:     GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCA-ACCGCCTG                         GCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
genomic: GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagct ... ctgcccgcagGCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
EST: gi|15368961|gb|BI528387.1|BI528387
EST:     GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTG                         GCCTTTGCGGAGGTGCTTTCCA-CAACGAGGTGTGGCAGGCATCGGCCGCT
genomic: GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagct ... ctgcccgcagGCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
EST: gi|23363583|gb|BU651403.1|BU651403
EST:     GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTG                         GCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
genomic: GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagct ... ctgcccgcagGCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
EST: gi|161817773|gb|FC100010.1|FC100010
EST:     GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTG                         GCTTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
genomic: GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagct ... ctgcccgcagGCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
EST: gi|10789885|gb|AV627250.1|AV627250
EST:     GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTG                         GCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT
genomic: GCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagct ... ctgcccgcagGCCTTTGCGGAGGTGCTTTCCAACAACGAGGTGTGGCAGGCATCGGCCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCTCCATGCAATGGGCCGCGGACGCCGCAGACCGCCTGgtgggtagctcgggttctgcaaagtggcttcactttgatgccaatctaatcaatctaattcagcactagtgatgttaggacagcacattaaacgcgctaccggacgctgataccgccgcccccaacctctcgtccgccaaccgctgcccgcag

- - - - - - - - - - - - - - - - - - - - -  TGCTGC