Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccggcaggggcacagaggggggcggtgcggcaggcagttggcattgtccatcgacatgtacacggacgcgcattatgggaggggcttagttgcggtttcgcagctacttgacaggcagacttgtaggagggttaccgtacgcgacgtctaaccgctgtgccgcgctcaccgcaaacgcgccccgctcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09808
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770739|gb|AV621564.1|AV621564
EST:     TGTCCAACATGCACGAGGACCTGTTCGTCAAGCTGCACGGCGCGGACCAG                         ATGGCCGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161824000|gb|FC107713.1|FC107713
EST:     TGTCCAACATGCATGAGGACCTGTTTGTCAAGCTGCCCGGCGCGGACCAA                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161819116|gb|FC108074.1|FC108074
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGTTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTTGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161821256|gb|FC106483.1|FC106483
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790010|gb|FC077133.1|FC077133
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGTTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161817951|gb|FC100240.1|FC100240
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161791562|gb|FC078938.1|FC078938
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161815810|gb|FC101873.1|FC101873
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161793545|gb|FC078457.1|FC078457
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790011|gb|FC077134.1|FC077134
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|14225928|gb|BG844744.1|BG844744
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790271|gb|FC077050.1|FC077050
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|239840663|gb|GR282353.1|GR282353
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790641|gb|FC079409.1|FC079409
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806161|gb|FC088942.1|FC088942
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|23361880|gb|BU649716.1|BU649716
EST:     TGTCCAACATGCACGAGGACCTGTTCGTCAAGCTGCACGGCGCGGACCAG                         ATGGCCGTGGAGAAGCTGGACCAGGGCATCAAGGGC
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGC
EST: gi|14242487|gb|BG861303.1|BG861303
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|15370151|gb|BI529577.1|BI529577
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161793901|gb|FC079307.1|FC079307
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161802885|gb|FC089914.1|FC089914
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161811022|gb|FC095277.1|FC095277
EST:     GCGCGGACCAA                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: GCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161823344|gb|FC110125.1|FC110125
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161816507|gb|FC105606.1|FC105606
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|9264025|gb|BE352172.1|BE352172
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790468|gb|FC079171.1|FC079171
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|15369078|gb|BI528504.1|BI528504
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161797243|gb|FC087174.1|FC087174
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161813541|gb|FC100943.1|FC100943
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806012|gb|FC091484.1|FC091484
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|22066668|gb|BQ817061.1|BQ817061
EST:     CTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: CTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|22058159|gb|BQ812877.1|BQ812877
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|15370963|gb|BI530389.1|BI530389
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161791751|gb|FC078646.1|FC078646
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161819197|gb|FC109884.1|FC109884
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790571|gb|FC077688.1|FC077688
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|23362441|gb|BU650261.1|BU650261
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161809461|gb|FC096518.1|FC096518
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|239840662|gb|GR282352.1|GR282352
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806641|gb|FC090098.1|FC090098
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|22073591|gb|BQ822929.1|BQ822929
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161815066|gb|FC104028.1|FC104028
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161793439|gb|FC077311.1|FC077311
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161807403|gb|FC094564.1|FC094564
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161816643|gb|FC102455.1|FC102455
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|34986849|gb|CF560766.1|CF560766
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161807404|gb|FC094565.1|FC094565
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161819196|gb|FC109883.1|FC109883
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161796978|gb|FC085635.1|FC085635
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|10125886|gb|BE724590.1|BE724590
EST:     AGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: AGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|34992099|gb|CF566016.1|CF566016
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161819012|gb|FC108854.1|FC108854
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161811023|gb|FC095278.1|FC095278
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161795097|gb|FC078241.1|FC078241
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGTTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161794182|gb|FC080485.1|FC080485
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTCCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161821964|gb|FC107620.1|FC107620
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGTTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806671|gb|FC093924.1|FC093924
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161819117|gb|FC108075.1|FC108075
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|22075854|gb|BQ824630.1|BQ824630
EST:     GGCGCGGACCAA                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: GGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161797717|gb|FC083735.1|FC083735
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806642|gb|FC090099.1|FC090099
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161790572|gb|FC077689.1|FC077689
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806160|gb|FC088941.1|FC088941
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161821965|gb|FC107621.1|FC107621
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161810720|gb|FC098498.1|FC098498
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGCCCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161816290|gb|FC102126.1|FC102126
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|22066669|gb|BQ817062.1|BQ817062
EST:     TCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161820090|gb|FC105811.1|FC105811
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|7593179|gb|AW707542.1|AW707542
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|16071998|gb|BI873994.1|BI873994
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161821257|gb|FC106484.1|FC106484
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161820597|gb|FC111063.1|FC111063
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|10775544|gb|AV632224.1|AV632224
EST:     TGTCCAACATGCACGAGGACCTGTTCGTCAAGCTGCACGGCGCGGACCAG                         ATGGCCGTGGAGAAGCTGGACCAGGCCATCAACGGCCTCGTGGCGGACCAC
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161816642|gb|FC102454.1|FC102454
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161819011|gb|FC108853.1|FC108853
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161824001|gb|FC107714.1|FC107714
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161793102|gb|FC078092.1|FC078092
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161791797|gb|FC078666.1|FC078666
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161801292|gb|FC088464.1|FC088464
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161816508|gb|FC105607.1|FC105607
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161806013|gb|FC091485.1|FC091485
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
EST: gi|161791264|gb|FC081163.1|FC081163
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCCAGGGCATCA-GGGCTTCGTGGCGGAC
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACC-AGGGCATCAAGGGCTTCGTGGCGGAC
EST: gi|161791263|gb|FC081162.1|FC081162
EST:     TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG                         ATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG
genomic: TGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccgg ... ccccgctcagATGGCTGTGGAGAAGCTGGACCAGGGCATCAAGGGCTTCGTGGCGGACCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAGgtggggccggcaggggcacagaggggggcggtgcggcaggcagttggcattgtccatcgacatgtacacggacgcgcattatgggaggggcttagttgcggtttcgcagctacttgacaggcagacttgtaggagggttaccgtacgcgacgtctaaccgctgtgccgcgctcaccgcaaacgcgccccgctcag

- - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC