1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAGgtgggtgggactttgtcgcgagcctgtgggggcgcaccaggctgcgacattgtgtcgtagcgcgtgaatagcctggtcaagggaccggcgctggggacgt...
species | Chlamydomonas reinhardtii |
transcript | EDP06728 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGCGGTGAAGCAGAACCCGGCTTTCCTCACACTCCGCAAGATCGAG GCGGCCCGCGAGATCGCCGGCACGATATTCCAGTCCGCEST: gi|161821633|gb|FC108134.1|FC108134
genomic: GTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAGgtgggtggga ... acccgcacagGCTGCCCGCGAGATCGCCGGCACGATATCCCAGTCCGC
EST: GTGAGGCGGTGAAGCAGAACCCGGCTTTCCTCACACTCCGCAAGATCGAG GCGGCCCGCGAGATCGCCGGCACGATATCCCAGT
genomic: GTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAGgtgggtggga ... acccgcacagGCTGCCCGCGAGATCGCCGGCACGATATCCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAGgtgggtgggactttgtcgcgagcctgtgggggcgcaccaggctgcgacattgtgtcgtagcgcgtgaatagcctggtcaagggaccggcgctggggacgt
- - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgaat