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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGAGACGTCCGTGGACGCGGTGGAGCTGTTTGACCGCGCCAGCCTGCGCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAGgtgcggaggaagggcacggagcaggaatggaggagggagccggcgagggaggaagcgaagatgaggaaggagggcagggggggggggtggaaagcgccgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01639
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10788293|gb|AV626013.1|AV626013
EST:     GCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAG                         GGCTGCGACCCCATGGCGGCAGCGCTGCTGATCGAGTGCCGCGGCCAGGAC
genomic: GCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAGgtgcggagga ... tgctgcgcagGGCTGCGACCCCATGGCGGCAGCGCTGCTGATCGAGTGCCGCGGCCAGGAC
EST: gi|6547630|gb|AV393414.1|AV393414
EST:     GCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAG                         GGCTGCGACCCCATGGCGGCAGCGCTGCTGATCGAGTGCCGCGGCCAGGAC
genomic: GCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAGgtgcggagga ... tgctgcgcagGGCTGCGACCCCATGGCGGCAGCGCTGCTGATCGAGTGCCGCGGCCAGGAC
EST: gi|10792476|gb|AV629842.1|AV629842
EST:     GCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAG                         GGCTGCGACCCCATGGCGGCAGCGCTGCTGATCGAGT
genomic: GCGAGTGCGAGAACAACGAGGACATGATGCGCCTGGTGCCCGACATCAAGgtgcggagga ... tgctgcgcagGGCTGCGACCCCATGGCGGCAGCGCTGCTGATCGAGT