1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCCACCTCGGGCGCTCTGGACCGTGTGGCCGCTGCGCTCAATGTGCCGTTCTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgtgcacgtttgcgttggggggagggcgtgggcgtgtgtgtgtgtgtgtgtccctgtgggtgtgtgcatgggtatgtgtgtccctgtgggtgt...
species | Chlamydomonas reinhardtii |
transcript | EDO99577 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACAEST: gi|23362713|gb|BU650533.1|BU650533
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: TGGAAGTTCTTTGGCAACCTGATGGACGCGG GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACAEST: gi|8513763|gb|BE121658.1|BE121658
genomic: TGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACAEST: gi|9210507|gb|BE337422.1|BE337422
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACAEST: gi|239842247|gb|GR284104.1|GR284104
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: CTTTGAGACGCCCACCGGCTGGAAGTTCTTGGGCAACCTGATGGACGCGG GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACAEST: gi|161798352|gb|FC083522.1|FC083522
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: CTTCGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG GCAAGTGCTCTGTGTGCGGCGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCACCTCGGGCGCTCTGGACCGTGTGGCCGCTGCGCTCAATGTGCCGTTCTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgtgcacgtttgcgttggggggagggcgtgggcgtgtgtgtgtgtgtgtgtccctgtgggtgtgtgcatgggtatgtgtgtccctgtgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgggta