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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCACCTCGGGCGCTCTGGACCGTGTGGCCGCTGCGCTCAATGTGCCGTTCTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgtgcacgtttgcgttggggggagggcgtgggcgtgtgtgtgtgtgtgtgtccctgtgggtgtgtgcatgggtatgtgtgtccctgtgggtgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO99577
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693006|gb|BI717311.1|BI717311
EST:     CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG                         GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: gi|23362713|gb|BU650533.1|BU650533
EST:     TGGAAGTTCTTTGGCAACCTGATGGACGCGG                         GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: TGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: gi|8513763|gb|BE121658.1|BE121658
EST:     CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG                         GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: gi|9210507|gb|BE337422.1|BE337422
EST:     CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG                         GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: gi|239842247|gb|GR284104.1|GR284104
EST:     CTTTGAGACGCCCACCGGCTGGAAGTTCTTGGGCAACCTGATGGACGCGG                         GCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA
EST: gi|161798352|gb|FC083522.1|FC083522
EST:     CTTCGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGG                         GCAAGTGCTCTGTGTGCGGCGAGGAGTCGTTCGGCACGGGCGGCGACCACA
genomic: CTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgt ... tttcacgcagGCAAGTGCTCTGTGTGCGGTGAGGAGTCGTTCGGCACGGGCGGCGACCACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCACCTCGGGCGCTCTGGACCGTGTGGCCGCTGCGCTCAATGTGCCGTTCTTTGAGACGCCCACCGGCTGGAAGTTCTTTGGCAACCTGATGGACGCGGgtgcgtgtgtgcacgtttgcgttggggggagggcgtgggcgtgtgtgtgtgtgtgtgtccctgtgggtgtgtgcatgggtatgtgtgtccctgtgggtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcgt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtggg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgggta