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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCCCACGCCCGACCAGAAGGTGGAGGACGGCGAGTTCGAGGAGAACGAGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacacggaacaagcatatgggcgctggaggagctggggcagggaagctgcggcaggcgcctggggctgccctggtctgcgggggttgggcccgtt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98981
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161800986|gb|FC084128.1|FC084128
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGC-CTTGGAGGTGTC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACT-GGAGGTGAC
EST: gi|8514354|gb|BE122249.1|BE122249
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|15703348|gb|BI727653.1|BI727653
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|14235139|gb|BG853955.1|BG853955
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|161797931|gb|FC087420.1|FC087420
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGC-CTTGGAGGTGTC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACT-GGAGGTGAC
EST: gi|15694596|gb|BI718901.1|BI718901
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGATGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|15370986|gb|BI530412.1|BI530412
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|14235138|gb|BG853954.1|BG853954
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|49464156|gb|BP092069.1|BP092069
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
EST: gi|16430815|gb|BI996041.1|BI996041
EST:     AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGC                         GTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC
genomic: AGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacac ... ctgtacccagGTTCTGGACGAGAAGGAGACGACCGTGTACAAGCGCGCACTGGAGGTGACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGCCCACGCCCGACCAGAAGGTGGAGGACGGCGAGTTCGAGGAGAACGAGGTGTACGCCGTGGACATTGTGGTCAGCAGCGGCGAGGGCAAGCCCCGCgtgagtacacggaacaagcatatgggcgctggaggagctggggcagggaagctgcggcaggcgcctggggctgccctggtctgcgggggttgggcccgtt

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