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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGCAGGAGATGGCCACCGCGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagctagggcgtttgctaggggggatggtgatggttgagttttgggtaaagagggcgggaggtggggtttcaagggattggtatggggctacgaga...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98923
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7687875|gb|AW758521.1|AW758521
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCG
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCG
EST: gi|22064029|gb|BQ815559.1|BQ815559
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
EST: gi|10126118|gb|BE724822.1|BE724822
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAA
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAA-
EST: gi|161800132|gb|FC086667.1|FC086667
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGTTGTTCAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
EST: gi|14228289|gb|BG847105.1|BG847105
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
EST: gi|161797057|gb|FC085662.1|FC085662
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGTTGTTCAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
EST: gi|22064028|gb|BQ815558.1|BQ815558
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
EST: gi|49461297|gb|BP089210.1|BP089210
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
EST: gi|6543868|gb|AV389652.1|AV389652
EST:     CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAG                         ATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC
genomic: CGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagcta ... cacaacgcagATGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGTGCTGTTTAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGCAGGAGATGGCCACCGCGCTGTCCAGCTCGGCGCTGGAGAAGACCTACGAGCTGCCCGACGGCCAGgtgggagctagggcgtttgctaggggggatggtgatggttgagttttgggtaaagagggcgggaggtggggtttcaagggattggtatggggctacgaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtat