1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGGACCACCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggaggccagggaagaaagggcccaaggcgtggggctcgcagcacagcttatgcccacctcgcgcaggctgaggccgtgtacactctgttgtgtcttaatctcagcatgccgcaatacacatgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDO98046 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAG GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCEST: gi|15368961|gb|BI528387.1|BI528387
genomic: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggagg ... acatgcgcagGTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGC
EST: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAG GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCEST: gi|23363583|gb|BU651403.1|BU651403
genomic: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggagg ... acatgcgcagGTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGC
EST: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAG GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCEST: gi|161817773|gb|FC100010.1|FC100010
genomic: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggagg ... acatgcgcagGTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGC
EST: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAG GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCEST: gi|10789885|gb|AV627250.1|AV627250
genomic: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggagg ... acatgcgcagGTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGC
EST: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAG GTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGC
genomic: CCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggagg ... acatgcgcagGTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGGACCACCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAAGgtgcgggaggccagggaagaaagggcccaaggcgtggggctcgcagcacagcttatgcccacctcgcgcaggctgaggccgtgtacactctgttgtgtcttaatctcagcatgccgcaatacacatgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG