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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGGATGCCCTCGCTGACGCCCGACGCGGGAAACAAGGTGGAGAAGCCGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggcatatggcgtaccatacctctggatggccgattgatacggccaaattctcccgcacccttttcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98045
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462921|gb|BP090834.1|BP090834
EST:     CGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAA
genomic: CGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCAC-TGGACGCCAGTGCCCGAGGGTGAGCCGGGCAA
EST: gi|161815102|gb|FC104051.1|FC104051
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|14231622|gb|BG850438.1|BG850438
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|10769761|gb|AV620586.1|AV620586
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|9460288|gb|BE453157.1|BE453157
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|6541894|gb|AV387678.1|AV387678
EST:     GCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: GCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|161821107|gb|FC110039.1|FC110039
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|161805213|gb|FC092557.1|FC092557
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGGCA-
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGG-CAA
EST: gi|14231623|gb|BG850439.1|BG850439
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG
EST: gi|15693145|gb|BI717450.1|BI717450
EST:     CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAG                         GACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGG-CAAG
genomic: CGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggca ... cccttttcagGACCTTGTGGCCGTGCACTGGACGCCAGTGCCCGAGGGTGAGCCGGGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTGGATGCCCTCGCTGACGCCCGACGCGGGAAACAAGGTGGAGAAGCCGGACAGCGAGACGCGGTGCCCTGCCAGCGGCAACAAGCTGCGCATGAAGgtatgtggcatatggcgtaccatacctctggatggccgattgatacggccaaattctcccgcacccttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC