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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTCAAGTCCAACCCCGAGGCGGTTAAGATCCTGTTCAACAAGTTCCGCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattgggattgggattgggatgtcatttgggtttgggttgggatgccatttgtgggggcacggattggcttgggagtgggagctggaattagtca...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97956
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364483|gb|BU652303.1|BU652303
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34984760|gb|CF558677.1|CF558677
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|161806299|gb|FC092278.1|FC092278
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTGACGGAGCCCAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|10779349|gb|AV636029.1|AV636029
EST:     CAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: CAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|6541786|gb|AV387570.1|AV387570
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34983317|gb|CF557234.1|CF557234
EST:     GCTCCGCCATCAAAAACAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34984971|gb|CF558888.1|CF558888
EST:     GCTCCGCCATCAAAAACAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|161807848|gb|FC098961.1|FC098961
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTGACGGAGCCCAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34984861|gb|CF558778.1|CF558778
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|161822022|gb|FC105975.1|FC105975
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTGACGGAGCCCAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|6545169|gb|AV390953.1|AV390953
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|15369223|gb|BI528649.1|BI528649
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|10778216|gb|AV634896.1|AV634896
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|239841872|gb|GR283729.1|GR283729
EST:     CTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: CTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|239841871|gb|GR283728.1|GR283728
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34989981|gb|CF563898.1|CF563898
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34994826|gb|CF568743.1|CF568743
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|22052088|gb|BQ810039.1|BQ810039
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34989982|gb|CF563899.1|CF563899
EST:     GCTCCGCCATAAAATTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34989983|gb|CF563900.1|CF563900
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34985330|gb|CF559247.1|CF559247
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34993848|gb|CF567765.1|CF567765
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|239841870|gb|GR283727.1|GR283727
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGGCA-CCGCCTGGACGCCTA
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGG-CAACCGCCTGGACGCCTA
EST: gi|34993413|gb|CF567330.1|CF567330
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34983318|gb|CF557235.1|CF557235
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34984761|gb|CF558678.1|CF558678
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
EST: gi|34983316|gb|CF557233.1|CF557233
EST:     GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAG                         ACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC
genomic: GCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattg ... ccacacacagACGCTGGAGAAGCAGCTTACGGAGCCTAGCGGCAACCGCCTGGACGCCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGCTCAAGTCCAACCCCGAGGCGGTTAAGATCCTGTTCAACAAGTTCCGCTCCGCCATCAGCTTCAAGCCCACCCTGGCCACCATCCTCACGCCCGAGgtgaggattgggattgggattgggatgtcatttgggtttgggttgggatgccatttgtgggggcacggattggcttgggagtgggagctggaattagtca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgg