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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTACGGCGCCCAGGCTGTGATGACCGGCAAGGGCCCCTTCCAGAACCTGGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagtgcatggaggtctctgtgcctcctttgcggatagctgcggatctgcatactaagtcagccacttcgtggataggacagtcatgtaagaattgtacttacatgtgccgtttcatgccgttctatgtctttgcaggcaag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97521
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161819180|gb|FC109867.1|FC109867
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161819180|gb|FC109867.1|FC109867
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161806371|gb|FC088996.1|FC088996
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161806371|gb|FC088996.1|FC088996
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161812526|gb|FC099421.1|FC099421
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161812526|gb|FC099421.1|FC099421
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161814252|gb|FC102057.1|FC102057
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161814252|gb|FC102057.1|FC102057
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|16071827|gb|BI873823.1|BI873823
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|16071827|gb|BI873823.1|BI873823
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161803217|gb|FC093236.1|FC093236
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161803217|gb|FC093236.1|FC093236
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161816281|gb|FC102117.1|FC102117
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161816281|gb|FC102117.1|FC102117
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|9210231|gb|BE337146.1|BE337146
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         T
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|9210231|gb|BE337146.1|BE337146
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         T
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161818086|gb|FC102260.1|FC102260
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161818086|gb|FC102260.1|FC102260
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|6541678|gb|AV387462.1|AV387462
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|6541678|gb|AV387462.1|AV387462
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|9458422|gb|BE452232.1|BE452232
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|9458422|gb|BE452232.1|BE452232
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161792947|gb|FC081265.1|FC081265
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161792947|gb|FC081265.1|FC081265
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|7593234|gb|AW707373.1|AW707373
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|7593234|gb|AW707373.1|AW707373
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|14234425|gb|BG853241.1|BG853241
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|14234425|gb|BG853241.1|BG853241
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161807653|gb|FC099806.1|FC099806
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161807653|gb|FC099806.1|FC099806
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161797639|gb|FC083696.1|FC083696
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161797639|gb|FC083696.1|FC083696
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161819941|gb|FC107508.1|FC107508
EST:     GGTGGAGCACCTGGCTGACCTCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161819941|gb|FC107508.1|FC107508
EST:     GGTGGAGCACCTGGCTGACCTCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|6547401|gb|AV393185.1|AV393185
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|6547401|gb|AV393185.1|AV393185
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161792483|gb|FC080411.1|FC080411
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|161792483|gb|FC080411.1|FC080411
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|16071987|gb|BI873983.1|BI873983
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-
EST: gi|16071987|gb|BI873983.1|BI873983
EST:     GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCG                         G
genomic: GGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagt ... tgcaggcaag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTACGGCGCCCAGGCTGTGATGACCGGCAAGGGCCCCTTCCAGAACCTGGTGGAGCACCTGGCTGACCCCGTCAACAACAACATCCTGACCAACTTCGgtaagcgagtgcatggaggtctctgtgcctcctttgcggatagctgcggatctgcatactaagtcagccacttcgtggataggacagtcatgtaagaattgtacttacatgtgccgtttcatgccgttctatgtctttgcaggcaag

- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA