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CGACCGCATCATGGCGCTGGACCTGCCCCACGGCGGCCACCTCAGCCACGGCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatggggagcggggcggggtggtggtggtggtggtggtggctgctgggatatcccaatccccagatattcagaagaaacacggcgttgggggagagc...
species | Chlamydomonas reinhardtii |
transcript | EDO97448 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATGEST: gi|6542140|gb|AV387924.1|AV387924
genomic: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
EST: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATGEST: gi|23363367|gb|BU651187.1|BU651187
genomic: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
EST: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATGEST: gi|16072819|gb|BI874815.1|BI874815
genomic: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
EST: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGNACTACGACATEST: gi|23363125|gb|BU650945.1|BU650945
genomic: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCG-ACTACGACAT
EST: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATGEST: gi|10788685|gb|AV626405.1|AV626405
genomic: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
EST: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATGEST: gi|6542099|gb|AV387883.1|AV387883
genomic: GCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
EST: ACCAGAGAAGATCAGCGCCACCTCCATCTACTTTGAG CAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
genomic: ACCA-AGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatgggg ... caccccgcagCAAATGCCGTACCGCCTGAACGAGGAGACTGGCCTGATCGACTACGACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACCGCATCATGGCGCTGGACCTGCCCCACGGCGGCCACCTCAGCCACGGCTACCAGACTGATACCAAGAAGATCAGCGCCACCTCCATCTACTTTGAGgtgcatggggagcggggcggggtggtggtggtggtggtggtggctgctgggatatcccaatccccagatattcagaagaaacacggcgttgggggagagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacacg