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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCAAGCCCTGGACCAAGTTCATCAACGCCGACAACCAGCACCTGGCCACACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagaggggcgcggctggggcgggccagccaggcaagcggcgggggcaggcgcagggggttgagagttatggggacgaatctggacgggggatggggga...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97438
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070306|gb|BQ819695.1|BQ819695
EST:     CGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG                         GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
genomic: CGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: gi|15692143|gb|BI716448.1|BI716448
EST:     GGACTTCATTGACAAGCTGCTGCGGTACGACCCCCAG                         GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
genomic: GGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: gi|14242535|gb|BG861351.1|BG861351
EST:     CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG                         GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
genomic: CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: gi|6541769|gb|AV387553.1|AV387553
EST:     AGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG                         GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
genomic: AGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: gi|22070307|gb|BQ819696.1|BQ819696
EST:     CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG                         GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
genomic: CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCAAGCCCTGGACCAAGTTCATCAACGCCGACAACCAGCACCTGGCCACACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagaggggcgcggctggggcgggccagccaggcaagcggcgggggcaggcgcagggggttgagagttatggggacgaatctggacgggggatggggga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatctg