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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCCGCCACCATCTACCGGCGCACCTACCGCCGCGGCGAGTACATCCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtggggcagcgggaggggagggcaggagaggagaagagcagggagcgggacagtgggggaaggaagaggcgggcggcgcgaggcgggagggggcgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO96721
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239841886|gb|GR283743.1|GR283743
EST:     CCCGCCCTCCTACAACCTGGAAGGGGCTGCCAACCTGGCGCACATGATGG                         GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCAAGTACCAGACCATCC
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCAT-C
EST: gi|161798448|gb|FC085724.1|FC085724
EST:     CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGG                         GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
EST: gi|16436775|gb|BM001995.1|BM001995
EST:     CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGG                         GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
EST: gi|239841885|gb|GR283742.1|GR283742
EST:     CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGG                         GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
EST: gi|15701461|gb|BI725766.1|BI725766
EST:     ACCTGGCGCACATGATGG                         GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
genomic: ACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC