1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGTCATGACCAAGCTGATCCCCCGCAACACTGTCATCCCCACCAAGAAGTCGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgcatgaggcaacgatggggaaatgcagggcacggcgtcatgtgcaaggaaccggcgaggtcatctatttggggggggggggtggcaaacaag...
species | Chlamydomonas reinhardtii |
transcript | EDP06660 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAG GTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACCACAAGCTGGGCCAGEST: gi|22061414|gb|BQ814221.1|BQ814221
genomic: CGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgc ... tactgtgcagGTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACCACAAGCTGGGCCAG
EST: CGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAG GTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACCACAAGCTGGGCCAGEST: gi|49462209|gb|BP090122.1|BP090122
genomic: CGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgc ... tactgtgcagGTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACCACAAGCTGGGCCAG
EST: CGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAG GTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACCACAAGCTGGGCCAG
genomic: CGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgc ... tactgtgcagGTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACCACAAGCTGGGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCATGACCAAGCTGATCCCCCGCAACACTGTCATCCCCACCAAGAAGTCGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgcatgaggcaacgatggggaaatgcagggcacggcgtcatgtgcaaggaaccggcgaggtcatctatttggggggggggggtggcaaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgca
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