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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgggggcagcgagcagggggtggaggttgcggcgcggatgtgacgtgggttttggggcacggcgttggcaagctgatgtatgtcggcggcggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05666
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10787048|gb|AV643720.1|AV643720
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|10776805|gb|AV633485.1|AV633485
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|15370381|gb|BI529807.1|BI529807
EST:     TGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|6545680|gb|AV391464.1|AV391464
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGATGTGGAGCCCGTGCTCAAT                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|10781414|gb|AV638094.1|AV638094
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|34984288|gb|CF558205.1|CF558205
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGA
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGA
EST: gi|10782138|gb|AV638818.1|AV638818
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|10776200|gb|AV632880.1|AV632880
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
EST: gi|10774394|gb|AV625217.1|AV625217
EST:     TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAG                         GGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG
genomic: TGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgg ... ctccccccagGGCACCAAGTCCACTCTGGAGCAGTACATCTACTGCTCGAGTGCGGGCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGTACGACATCAACGGCCGCGAGGCGGTGGAGGTGGAGCCCGTGCTCAAGgtgggggcgggggcagcgagcagggggtggaggttgcggcgcggatgtgacgtgggttttggggcacggcgttggcaagctgatgtatgtcggcggcggc

- - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt