1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGCCGCACCATAACGCAGTTTGCGCTGTCGCTGGACGGCCTGGCAACACGCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgtgggcggtacagctaattcgtacggacttggggcagggctacagccagtggttctctgggcggtggttgggtatcgttgtgtagcgcccctggctttactgacatttcccgaatccatgtgtggccctgtgatgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05606 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGACGCCCTGCATGCGATGCTGCAG GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGGEST: gi|9460034|gb|BE453030.1|BE453030
genomic: GGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGGEST: gi|10769232|gb|AV620057.1|AV620057
genomic: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: GAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGGEST: gi|14227480|gb|BG846296.1|BG846296
genomic: GAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGGEST: gi|15373471|gb|BI532897.1|BI532897
genomic: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
genomic: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCGCACCATAACGCAGTTTGCGCTGTCGCTGGACGGCCTGGCAACACGCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgtgggcggtacagctaattcgtacggacttggggcagggctacagccagtggttctctgggcggtggttgggtatcgttgtgtagcgcccctggctttactgacatttcccgaatccatgtgtggccctgtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG