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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACACCGCTGGTGATGGCACCACCACCGCCACCGTCCTGTCCGCCGCCTTCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacggcgggggagggcggcaggaaacacccgggccggacagtggggagggatggaagaagacgcagacatgatgcatatgtgggcacgtgcgtca...

Basic information

species Chlamydomonas reinhardtii
transcript EDP03982
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10786054|gb|AV642726.1|AV642726
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGGAGAAGAACGTGAACGCGCTGGTGAAGGAGCT
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCT
EST: gi|6552100|gb|AV397884.1|AV397884
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGG
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGG
EST: gi|22051882|gb|BQ809934.1|BQ809934
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAG
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAG
EST: gi|6547392|gb|AV393176.1|AV393176
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAA
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAA
EST: gi|6546630|gb|AV392414.1|AV392414
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGGAGAAGACCGTGAAC
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGGAGAAGACCGTGAAC
EST: gi|15702828|gb|BI727133.1|BI727133
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAG
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAG
EST: gi|16072229|gb|BI874225.1|BI874225
EST:     TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAG                         CTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAG
genomic: TCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacgg ... gtgcacgcagCTGACCCGCGGCATGGAGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACACCGCTGGTGATGGCACCACCACCGCCACCGTCCTGTCCGCCGCCTTCATCGCTGAGGGCATGAAGATCGTGGCCGCCGGCACCAACCCCGTGCAGgtgggcacggcgggggagggcggcaggaaacacccgggccggacagtggggagggatggaagaagacgcagacatgatgcatatgtgggcacgtgcgtca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgcgt