1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGACCGCACCAAGTACCAGATCCAGATCCCGCTGCCGCCCAAGATCGACCCCAGCGTCACCATGATGACGGTTGAGGAGAAGCCCGACATCACATACAGgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgtgggcgtgtcggcgtggggctgccgggggaggggggcgcctgcgtgtgcggactgcagc...
species | Chlamydomonas reinhardtii |
transcript | EDP03835 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCCAGCGTCACCATGATGACGGTTGAGGAGAAGCCCGACATCACATACAG CGACATCGGCTGCAGCAAGGAGCAGATGGACAAGATGGGCGAGGTGGTGGAEST: gi|23363344|gb|BU651164.1|BU651164
genomic: CCCAGCGTCACCATGATGACGGTTGAGGAGAAGCCCGACATCACATACAGgtgtgtgcgc ... ccgcccgcagCGACATCGGCGGCAGCAAGGAGCAGATGGACAAGATGCGCGAGGTGGTGGA
EST: CCCAGCGTCACCATGATGACGGTTGAGGAGAAGCCCGACATCACATACAG CGACATCGGCGGCAGCAAGGAGCAGATGGACAAGATGCGCGAGGTGGTGGA
genomic: CCCAGCGTCACCATGATGACGGTTGAGGAGAAGCCCGACATCACATACAGgtgtgtgcgc ... ccgcccgcagCGACATCGGCGGCAGCAAGGAGCAGATGGACAAGATGCGCGAGGTGGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACCGCACCAAGTACCAGATCCAGATCCCGCTGCCGCCCAAGATCGACCCCAGCGTCACCATGATGACGGTTGAGGAGAAGCCCGACATCACATACAGgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgtgggcgtgtcggcgtggggctgccgggggaggggggcgcctgcgtgtgcggactgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt