1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAGgtgcgcgctttcaaacagagccagctacttcctcccggcctccctgtgtcatagcatgtttcaccactcagcgccactcatgctcccgctcacacacacacctaccctacccgcttacacgcccacag
species | Chlamydomonas reinhardtii |
transcript | EDP03797 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAG GGCACTGCCGCCATCACTCTGGCGGCGCTGCTGGCGGCACTGCGTGTGACGEST: gi|49463652|gb|BP091565.1|BP091565
genomic: TCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAGgtgcgcgctt ... acgcccacagGGCACTGCCGCCATCACTCTGGCGGCGCTGCTGGCGGCACTGCGTGTGACG
EST: TCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAG GGCACTGCCGCCATCACTCTGGCGGCGCTGCTGGCGGCACTGCGTGTGACGEST: gi|239840733|gb|GR282423.1|GR282423
genomic: TCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAGgtgcgcgctt ... acgcccacagGGCACTGCCGCCATCACTCTGGCGGCGCTGCTGGCGGCACTGCGTGTGACG
EST: TCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAG GGCACTGCCGCCATCACTCTGGCGGCGCTGCTGGCGGCACTGCGTGTGACG
genomic: TCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAGgtgcgcgctt ... acgcccacagGGCACTGCCGCCATCACTCTGGCGGCGCTGCTGGCGGCACTGCGTGTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCTGGACAAGTACAAGGATGACTACTGCTGCTTCAACGACGACATCCAGgtgcgcgctttcaaacagagccagctacttcctcccggcctccctgtgtcatagcatgtttcaccactcagcgccactcatgctcccgctcacacacacacctaccctacccgcttacacgcccacag
- - - - - - - - AGGATG
- - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - GCTGCT