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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatgggggtgggggggggttgccgtgcaaggggcattgcaggataaataacagggggcagcgggaccggcataaatgacatgctggtggcatgaca...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10772550|gb|AV623373.1|AV623373
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|6544442|gb|AV390226.1|AV390226
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|14228932|gb|BG847764.1|BG847764
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|15692808|gb|BI717113.1|BI717113
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|15695185|gb|BI719490.1|BI719490
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|49461909|gb|BP089822.1|BP089822
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|23367697|gb|BU655515.1|BU655515
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|16072685|gb|BI874681.1|BI874681
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|23363461|gb|BU651281.1|BU651281
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|15695448|gb|BI719753.1|BI719753
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|16437590|gb|BM002810.1|BM002810
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|49461921|gb|BP089834.1|BP089834
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|16431544|gb|BI996770.1|BI996770
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|22050064|gb|BQ809049.1|BQ809049
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|49464632|gb|BP092545.1|BP092545
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|23367839|gb|BU655657.1|BU655657
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
EST: gi|23365706|gb|BU653526.1|BU653526
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCC
EST: gi|15697745|gb|BI722050.1|BI722050
EST:     GCCGTGGACGGCAGCTATGTGCTTCACAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGATGATGGGCC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCC
EST: gi|49462669|gb|BP090582.1|BP090582
EST:     GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAG                         GTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC
genomic: GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatggg ... ctggccacagGTGCCGGCCAACGACTCGGAGGCTCTGCGCTCGCCGCTGATGGGCCTGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGTGGACGGCAGCTATGTGCTTCAGAAGGGCAAGATCCACAAGgtgggatgggggtgggggggggttgccgtgcaaggggcattgcaggataaataacagggggcagcgggaccggcataaatgacatgctggtggcatgaca

- - - - - GCAGCT
- - - - - - - - - - - - - - -  GCAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctggt