1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGACATGGTTCACGCCTTCAAGCCCAACCCCAAGAGCCACATCCAGGAGGCCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtggcgtggaggacgacttggcttgaggccgtgtagcgccgtgtgcatgcgcattttgccacggatatcgtcgtgcccgtctgcccgcctctt...
species | Chlamydomonas reinhardtii |
transcript | EDP00871 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|7687778|gb|AW758424.1|AW758424
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|8286610|gb|BE024169.1|BE024169
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|15697484|gb|BI721789.1|BI721789
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACCTTCCTGCTEST: gi|23361192|gb|BU649012.1|BU649012
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCT
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|161817937|gb|FC103632.1|FC103632
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|6547218|gb|AV393002.1|AV393002
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|22064859|gb|BQ816064.1|BQ816064
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|15373362|gb|BI532788.1|BI532788
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGEST: gi|6542126|gb|AV387910.1|AV387910
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACATGGTTCACGCCTTCAAGCCCAACCCCAAGAGCCACATCCAGGAGGCCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtggcgtggaggacgacttggcttgaggccgtgtagcgccgtgtgcatgcgcattttgccacggatatcgtcgtgcccgtctgcccgcctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtctgc