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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGATGTGCACAAGCGCAAGGAGATTGTGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAGgtaggcacatgcgtacagaacggagtgtgctgtgacttgtgagtgttttaccttagtccgaagcgccgctaccgcgaaacggcctcaagcatgcatttaccgtcacgccttgatgcgagcaccttctctgactatcgtgacctccttcctccgtccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00834
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22058843|gb|BQ813132.1|BQ813132
EST:     TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAG                         GGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
genomic: TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAGgtaggcacat ... ctccgtccagGGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
EST: gi|6547112|gb|AV392896.1|AV392896
EST:     TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAG                         GGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
genomic: TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAGgtaggcacat ... ctccgtccagGGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
EST: gi|10191266|gb|BE761342.1|BE761342
EST:     TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAG                         GGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
genomic: TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAGgtaggcacat ... ctccgtccagGGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
EST: gi|161804509|gb|FC088837.1|FC088837
EST:     TGCAGGACGTGACACTGCACGACCTGGACTCCGCCAACGCGCGGCCACAG                         GGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGANA
genomic: TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAGgtaggcacat ... ctccgtccagGGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
EST: gi|22058844|gb|BQ813133.1|BQ813133
EST:     TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAG                         GGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA
genomic: TGCAGGACGTCACGCTGCACGACCTGGACTCCGCCAACGCGCGGCCACAGgtaggcacat ... ctccgtccagGGCGGCGGCGACATTATGAGCGTCATGGGCAGCATGCTCAAACCCAAGAAA