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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGACGTGATCGCCGCCGCGCGCACCGCCTTCGACGCCGCCGTGCGCTTGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccggggcggccggggagccgagcaaggggtatcggcgcaggccagccttggcacgtcgggcttggtggcaacgtcagcatcagccgttggcgct...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98981
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161800986|gb|FC084128.1|FC084128
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|8514354|gb|BE122249.1|BE122249
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|161808568|gb|FC094884.1|FC094884
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14242417|gb|BG861233.1|BG861233
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14237056|gb|BG855872.1|BG855872
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGGTGATGAGCCACGA
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCG-TGATGAGCCACGA
EST: gi|14235139|gb|BG853955.1|BG853955
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|161797931|gb|FC087420.1|FC087420
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14238089|gb|BG856905.1|BG856905
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|15694596|gb|BI718901.1|BI718901
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|15370986|gb|BI530412.1|BI530412
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14240342|gb|BG859158.1|BG859158
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|22076196|gb|BQ824972.1|BQ824972
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14242051|gb|BG860867.1|BG860867
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|15370984|gb|BI530410.1|BI530410
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|6544166|gb|AV389950.1|AV389950
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTG
EST: gi|14240161|gb|BG858977.1|BG858977
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14235138|gb|BG853954.1|BG853954
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|22071304|gb|BQ820642.1|BQ820642
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|14240115|gb|BG858931.1|BG858931
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTTCGCCCCGCTCCATAAG                         GTGGCTGAGTCGGTTGGCTGCAAACTGGTGGAGGGCGTGATGAGCCACCAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|49464156|gb|BP092069.1|BP092069
EST:     TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: gi|16430815|gb|BI996041.1|BI996041
EST:     TGATACGCCCCGGCATGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG                         GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGGACGTGATCGCCGCCGCGCGCACCGCCTTCGACGCCGCCGTGCGCTTGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccggggcggccggggagccgagcaaggggtatcggcgcaggccagccttggcacgtcgggcttggtggcaacgtcagcatcagccgttggcgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtatc
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