1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCCTACAGCAGCAGCAAGGGATGCATTCGGCTGGCGGACATGCGCAACGCGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgccgcagggggacgcagcctggcagggcaaggcagcgcgggcgctgttgggcgctggtccaccgggatgccggcgtgggtatgctgggccctt...
species | Chlamydomonas reinhardtii |
transcript | EDO98296 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|161819998|gb|FC109684.1|FC109684
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|161799655|gb|FC086138.1|FC086138
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|16430150|gb|BI995376.1|BI995376
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|161795145|gb|FC078796.1|FC078796
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCANGAGTCCCAG GCGAAACA-GTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACEST: gi|34982149|gb|CF556066.1|CF556066
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAA-CAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCAC
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|34982148|gb|CF556065.1|CF556065
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCATGAGTCCCAC GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|9461119|gb|BE453574.1|BE453574
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|161799625|gb|FC087265.1|FC087265
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACAEST: gi|10786541|gb|AV643213.1|AV643213
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
EST: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAG GCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
genomic: CGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgcc ... gaatgcacagGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAGCGACATCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTACAGCAGCAGCAAGGGATGCATTCGGCTGGCGGACATGCGCAACGCGGCGCTGTGCGACCGGCACTCGAAAGCGTTTGAGGAGCAGGAGTCCCAGgtgcgccgccgcagggggacgcagcctggcagggcaaggcagcgcgggcgctgttgggcgctggtccaccgggatgccggcgtgggtatgctgggccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtat