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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCCTGGAGGAGCGGTCCGTGTGGGGCACCAACGACGAGACGCGCACAGCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgtgggttgtagggcggggcgttagctgcgtgtgtgtggttgggtgtggggggagggggggggatgttcattgcattcaaaaaataaaccatt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98046
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10774172|gb|AV624995.1|AV624995
EST:     GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG                         CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTC-TAAGGCCTG
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
EST: gi|15368961|gb|BI528387.1|BI528387
EST:     GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG                         CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
EST: gi|14238251|gb|BG857067.1|BG857067
EST:     GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG                         CGGGGACAAGACCAGCCGCTAGACGCTGCCGCTGTCGG-TGCCTAAAGCCT
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGT-CCTAAGGCCT
EST: gi|161817773|gb|FC100010.1|FC100010
EST:     GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG                         CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
EST: gi|161817687|gb|FC099976.1|FC099976
EST:     GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG                         CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGG
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGG
EST: gi|10789885|gb|AV627250.1|AV627250
EST:     TGGCGGCGCTACG                         CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
genomic: TGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATCCTGGAGGAGCGGTCCGTGTGGGGCACCAACGACGAGACGCGCACAGCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgtgggttgtagggcggggcgttagctgcgtgtgtgtggttgggtgtggggggagggggggggatgttcattgcattcaaaaaataaaccatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa