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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGTGCGCTGAAGGCATTCCACCTGGACCCGGCTCAGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgggtgcggtgcagagctggtgcatgaagtggggcccggaggctggcagaaagcaccgcatgcagtgtatgcaatgctgttgcggcattgaag...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97448
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126110|gb|BE724814.1|BE724814
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGC
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGC
EST: gi|10771707|gb|AV622530.1|AV622530
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10126090|gb|BE724794.1|BE724794
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|6550255|gb|AV396039.1|AV396039
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTG
EST: gi|6542140|gb|AV387924.1|AV387924
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10126692|gb|BE725412.1|BE725412
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10784593|gb|AV641265.1|AV641265
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATG
EST: gi|15698243|gb|BI722548.1|BI722548
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10127493|gb|BE726197.1|BE726197
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|23363367|gb|BU651187.1|BU651187
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10790498|gb|AV627864.1|AV627864
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCT
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCT
EST: gi|23363125|gb|BU650945.1|BU650945
EST:     CGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: CGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10788685|gb|AV626405.1|AV626405
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: gi|10771492|gb|AV622315.1|AV622315
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG                         GTGTACACGGCGCTGCTGCAGCCGC
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGC
EST: gi|10792252|gb|AV629618.1|AV629618
EST:     AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTACAG                         GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCGTGCGCTGAAGGCATTCCACCTGGACCCGGCTCAGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgggtgcggtgcagagctggtgcatgaagtggggcccggaggctggcagaaagcaccgcatgcagtgtatgcaatgctgttgcggcattgaag

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