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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGCGTCATGGGCGGCGGCTTCGTGCCGCAGTTTGGTGTGGCTGGCGGCAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtggttgcgaggggcgctggggggtacatggatgccacattgctatacaatacacgcgagaagcttcgctgtcagatcggcggactcagaatcgtacccccgggcttctgtcaactagatggcaccattgaactacccccgcatccccgcatctgtcccacacttctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96606
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808878|gb|FC099536.1|FC099536
EST:     CCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGCG
genomic: CCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|16432197|gb|BI997423.1|BI997423
EST:     ATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
genomic: ATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|7615781|gb|AW721221.1|AW721221
EST:     CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
genomic: CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|15369024|gb|BI528450.1|BI528450
EST:     CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
genomic: CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|161802151|gb|FC092053.1|FC092053
EST:     CAAGGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGCG
genomic: CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|16428819|gb|BI994045.1|BI994045
EST:     TCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
genomic: TCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|9210411|gb|BE337326.1|BE337326
EST:     CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAAGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
genomic: CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG
EST: gi|161802152|gb|FC092054.1|FC092054
EST:     CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAG                         CCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGCG
genomic: CAACGCCTACAAGTCCATCTTTGCGGCGGATGAGTCCAAGGTCGCGGAAGgtgagcgtgg ... acttctgcagCCGCCAAGCCGGTGGAGAAGGCTGTGGCAGACTGGGCTCCCTTTACCGGTG