1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGACACGGCCGGCCAGGAGCGCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcgcgcacgcgggcacgggggcttgatgtggacattgcaaagcggcaaatgcaaaggggtggaatctcgtgggatttccagctgcggaagggggcgccagctcaaccgccgtgggggtgctcatgccgtacag
species | Chlamydomonas reinhardtii |
transcript | EDO96600 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|49467422|gb|BP095335.1|BP095335
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACEST: gi|10778347|gb|AV635027.1|AV635027
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGAC
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|161796597|gb|FC082914.1|FC082914
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|10771327|gb|AV622150.1|AV622150
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|22068890|gb|BQ818649.1|BQ818649
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|10776378|gb|AV633058.1|AV633058
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|10778045|gb|AV634725.1|AV634725
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACTAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|22063901|gb|BQ815490.1|BQ815490
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACEST: gi|16432961|gb|BI998187.1|BI998187
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGAC
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|6546326|gb|AV392110.1|AV392110
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|10777853|gb|AV634533.1|AV634533
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|15697029|gb|BI721334.1|BI721334
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGGEST: gi|16430540|gb|BI995766.1|BI995766
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
EST: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATT GTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
genomic: GCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcg ... tgccgtacagGTCGTATACGATGTGACGGACCAGGAGAGCTTCAACAACGTCAAGCAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGACACGGCCGGCCAGGAGCGCTTCCGGACTATCACCAGCAGCTACTACCGTGGCGCGCACGGCATCATTgtaagcagcgcgcacgcgggcacgggggcttgatgtggacattgcaaagcggcaaatgcaaaggggtggaatctcgtgggatttccagctgcggaagggggcgccagctcaaccgccgtgggggtgctcatgccgtacag
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