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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGCGAGCTGGGCAGCGCTTACGGAATCGGCTTCAACCGCCTATTGGCGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccaggcatttcgtgccacagcttttgcatttgaggcgagaagtgccacaggtgctccatttgtgtccatgctccaaacccaaaatacatcctgagctgtttatgcaatcgtattttatgtgttcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96585
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126907|gb|BE725611.1|BE725611
EST:     CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAG                         GGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
genomic: CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccag ... gtgttcacagGGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
EST: gi|9460002|gb|BE453015.1|BE453015
EST:     CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAG                         GGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
genomic: CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccag ... gtgttcacagGGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
EST: gi|49458293|gb|BP086206.1|BP086206
EST:     CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAG                         GGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
genomic: CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccag ... gtgttcacagGGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
EST: gi|10126760|gb|BE725464.1|BE725464
EST:     CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAG                         GGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
genomic: CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccag ... gtgttcacagGGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
EST: gi|49460107|gb|BP088020.1|BP088020
EST:     CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAG                         GGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAA
genomic: CGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccag ... gtgttcacagGGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAA
EST: gi|161790197|gb|FC076976.1|FC076976
EST:     GCTCAACAACATGCCCATCANA-CGCTTCGCCGACTTCCTCACACGCAAG                         GGCGCGATGAAAGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG
genomic: GCTCAACAACATGCCCATCA-AGCGCTTCGCCGACTTCCTCACACGCAAGgtgcggccag ... gtgttcacagGGCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGG