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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCAGCTGCTGCTGTACCCCAACCCCACCGACCCGCTCAACAGCGAGGCGGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagcacgggtctgacgtggccgtgggcttgaggcacggtttcttttttagggtgcggcaggcagagcagagggggcgtgcagagggctggcagga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09753
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23365360|gb|BU653180.1|BU653180
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTACGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
EST: gi|10788266|gb|AV644938.1|AV644938
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTACGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
EST: gi|8400882|gb|BE056516.1|BE056516
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTATGCACGGNCGGAGCAGCTGCTGGGGCACAACCCCG
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
EST: gi|49466669|gb|BP094582.1|BP094582
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTATGCA
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCA
EST: gi|16071742|gb|BI873738.1|BI873738
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTATGCACGGGCGGAGCAGCTGCTGGNGCACAACCCCG
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
EST: gi|22068907|gb|BQ818660.1|BQ818660
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
EST: gi|15699843|gb|BI724148.1|BI724148
EST:     GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGG                         ACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG
genomic: GGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagca ... gctgctgcagACTATGTGCAGCGCTATGCACGGCCGGAGCAGCTGCTGGGGCACAACCCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCAGCTGCTGCTGTACCCCAACCCCACCGACCCGCTCAACAGCGAGGCGGCGGCGCTGCTGATGCGCGAGCCGCAGCTGTACGCCAACAAAGTCAAGGgtgagcagcacgggtctgacgtggccgtgggcttgaggcacggtttcttttttagggtgcggcaggcagagcagagggggcgtgcagagggctggcagga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagggt