1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAAGAGGAGGAGTCGGGCTGGAAGTACGTGCACGGCGACGTGTTCCGCTTCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAGgtgcggagcctaacgcagggtggcgggactggaggcgcttggtcgtccagcacagacggttgccatcatgatggggaaagcgcacatggggcgggcggcc...
species | Chlamydomonas reinhardtii |
transcript | EDP09725 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAG CTCTTCTATCTGGCGCTGTTTGTGTTCGTGCTGGCGCTGGTGGGCGTGTTCEST: gi|10789591|gb|AV626956.1|AV626956
genomic: TCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAGgtgcggagcc ... tgccccgcagCTCTTCTATCTGGCGCTGTTTGTGTTCGTGCTGGCGCTGGTGGGCGTGTTC
EST: TCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAG CTCTTCTATCTGGCGCTGTTTGTGTTCGTGCTGGCGCTGGTGGGCGTGTTCEST: gi|14242414|gb|BG861230.1|BG861230
genomic: TCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAGgtgcggagcc ... tgccccgcagCTCTTCTATCTGGCGCTGTTTGTGTTCGTGCTGGCGCTGGTGGGCGTGTTC
EST: TCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAG CTCTTCTATCTGGCGCTGTTTGTGTTCGTGCTGGCGCTGGTGGGCGTGTTC
genomic: TCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAGgtgcggagcc ... tgccccgcagCTCTTCTATCTGGCGCTGTTTGTGTTCGTGCTGGCGCTGGTGGGCGTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAGGAGGAGTCGGGCTGGAAGTACGTGCACGGCGACGTGTTCCGCTTCCCTCCCTACAAGAACCTGTTCTGTGCCTTTGTTGGCACGGGCACCCAGgtgcggagcctaacgcagggtggcgggactggaggcgcttggtcgtccagcacagacggttgccatcatgatggggaaagcgcacatggggcgggcggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcacat