1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTCCGCGGGCAGGTGCTGGCAGAGGACCTGTCCTTCCGCGCGGCGGCGCTGTCCAAACTGCAGgtgtgtgtggggatgggggggggcaacgcagctgtggagggtgaggggttgggagcagcaaactgcaggtggggcgggggcactggaggtttggagggtg...
species | Chlamydomonas reinhardtii |
transcript | EDP09572 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGCGGAGGACCTGTCCTTCCGCGCGGCGGCGCTGTCCAAACTGCAG GAGCTGCGCGAGCGGGCGGTGCGTGCGGAGAAGAAGAAGCTGCTGGCAGAGEST: gi|161791425|gb|FC077996.1|FC077996
genomic: TGCTGGCAGAGGACCTGTCCTTCCGCGCGGCGGCGCTGTCCAAACTGCAGgtgtgtgtgg ... ccgcccctagGAGCTGCGCGAGCGGGCGGTGCGCGCGGAGAAGAAGAAGCTGCTGGCAGAG
EST: TGCTGGCGGAGGACCTGTCCTTCCGCGCGGCGGCGCTGTCCAAACTGCAG GAGCTGCGCGAGCGGGCGGTGCGTGCGGAGAAGAAGAAGCTGCTGGCAGAG
genomic: TGCTGGCAGAGGACCTGTCCTTCCGCGCGGCGGCGCTGTCCAAACTGCAGgtgtgtgtgg ... ccgcccctagGAGCTGCGCGAGCGGGCGGTGCGCGCGGAGAAGAAGAAGCTGCTGGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGCGGGCAGGTGCTGGCAGAGGACCTGTCCTTCCGCGCGGCGGCGCTGTCCAAACTGCAGgtgtgtgtggggatgggggggggcaacgcagctgtggagggtgaggggttgggagcagcaaactgcaggtggggcgggggcactggaggtttggagggtg
- - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg