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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGGCCAAGGTGGCCTCGGATGAGGGCCACAGCGAGAGCCTGACGCTGACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccagcgtgggcgggcaggctgacgggcgggcagaaggccgcgtacttcatcgctcgaacaacaccagcttaggcacatgggaaggggcttccgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09489
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161810070|gb|FC099870.1|FC099870
EST:     GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGG                         GTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
genomic: GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccag ... atacctgcagGTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
EST: gi|10126486|gb|BE725190.1|BE725190
EST:     GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGG                         GTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
genomic: GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccag ... atacctgcagGTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
EST: gi|16433892|gb|BI999118.1|BI999118
EST:     GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGN                         GTGGCCTGACGGAGAACGACTTCAT
genomic: GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccag ... atacctgcagGTGGCCTGACGGAGAACGACTTCAT
EST: gi|161802865|gb|FC090219.1|FC090219
EST:     GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGG                         GTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
genomic: GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccag ... atacctgcagGTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
EST: gi|161821508|gb|FC109803.1|FC109803
EST:     GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGG                         GTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA
genomic: GACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccag ... atacctgcagGTGGCCTGACGGAGAACGACTTCATTGTTGCCTCCAAGATCAACGACCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGTGGCCAAGGTGGCCTCGGATGAGGGCCACAGCGAGAGCCTGACGCTGACGCACAAGGGCGCTGAGGTCGTGGCGCAGCTGTGCACCAAGTCCCTGGgtgcgtccagcgtgggcgggcaggctgacgggcgggcagaaggccgcgtacttcatcgctcgaacaacaccagcttaggcacatgggaaggggcttccgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca