1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCGTGGACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCCgtgagtcgcaccgttcgcactgacacactgtgccgcgccttgcagctcagggcagctccgacagcaccacgttgcagctccggccgcactgactcagcac...
species | Chlamydomonas reinhardtii |
transcript | EDP09352 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCC GCCGCTAGCCTTGCCTTCAACACCAGCATCACGCTGGAGCCCGCCTTCTCGEST: gi|22050043|gb|BQ809040.1|BQ809040
genomic: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCCgtgagtcgca ... ctcaccacagGCCGCTAGCCTTGCCTTCAACACCAGCATCACGCTGGAGCCCGCCTTCTCG
EST: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCC GCCGCTAGCCTTGCCTTCAACACCAGCATCACGCTGGAGCCCGCCTTCTCGEST: gi|16433061|gb|BI998287.1|BI998287
genomic: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCCgtgagtcgca ... ctcaccacagGCCGCTAGCCTTGCCTTCAACACCAGCATCACGCTGGAGCCCGCCTTCTCG
EST: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCC GCCGCTAGCCTTGCCTTCAACACCAGCATCACGCTGGAGCCCGCCTTCTCGEST: gi|22072330|gb|BQ821668.1|BQ821668
genomic: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCCgtgagtcgca ... ctcaccacagGCCGCTAGCCTTGCCTTCAACACCAGCATCACGCTGGAGCCCGCCTTCTCG
EST: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCC GCCGCTAGCCT
genomic: ACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCCgtgagtcgca ... ctcaccacagGCCGCTAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCGTGGACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCAACGCCgtgagtcgcaccgttcgcactgacacactgtgccgcgccttgcagctcagggcagctccgacagcaccacgttgcagctccggccgcactgactcagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcacc