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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCGCGTGGCGGCTCGCCGTGGGGCGCCGGCACCCTGGCCGGCCCCGACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctgggggcgcggatgctagcacgggaatggaaggggacaggcatagaggctgtcagagcctggggtcatgcatggccagaatggagtgaggac...

Basic information

species Chlamydomonas reinhardtii
transcript EDP08044
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8513574|gb|BE121469.1|BE121469
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGC
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGC
EST: gi|22060218|gb|BQ813721.1|BQ813721
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GNGCA-GCAGCT
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagG-GCAAGCAGCT
EST: gi|10127247|gb|BE725951.1|BE725951
EST:     ACGGCTTCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAAAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|23362006|gb|BU649826.1|BU649826
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|15703386|gb|BI727691.1|BI727691
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|22071316|gb|BQ820654.1|BQ820654
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|161793408|gb|FC077280.1|FC077280
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCCAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|8932648|gb|BE227409.1|BE227409
EST:     ACGGCTTCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAACAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|8513573|gb|BE121468.1|BE121468
EST:     AGCAGGCCGAGATCCTG                         GGCAAACAGCTGGCCGGCGTTTCGAAGAAGCTGAAGGCGTAAGCAAAACTT
genomic: AGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|161823557|gb|FC108518.1|FC108518
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCCAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|8286990|gb|BE024549.1|BE024549
EST:     ACGGCTTCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTTCGAAGAAGCTGAAGGCGTAAGCAAAACTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|23362005|gb|BU649825.1|BU649825
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAAAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|22060215|gb|BQ813720.1|BQ813720
EST:     ACGGCTCCCGCCAGCCCGGTGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAATAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|161823556|gb|FC108517.1|FC108517
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCCAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|161793407|gb|FC077279.1|FC077279
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCCAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|23364922|gb|BU652742.1|BU652742
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|161799533|gb|FC086094.1|FC086094
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCCAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|16436030|gb|BM001250.1|BM001250
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|161814940|gb|FC103967.1|FC103967
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCCAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
EST: gi|22076283|gb|BQ825059.1|BQ825059
EST:     ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTG                         GGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG
genomic: ACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctg ... ctgaccgcagGGCAAGCAGCTGGCCGGCGTTGCGAAGAAGCTGAAGGCGTAAGCAAAGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGCGCGTGGCGGCTCGCCGTGGGGCGCCGGCACCCTGGCCGGCCCCGACGGCTCCCGCCAGCCCGGCGAGGACGAGCTGCAGCAGGCCGAGATCCTGgtgggtgctgggggcgcggatgctagcacgggaatggaaggggacaggcatagaggctgtcagagcctggggtcatgcatggccagaatggagtgaggac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg