Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCCACGCGTACTTGGCGGGCGCGGTCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAGgtaggtggagcaggggaaggagcaggggaagggctttcgaaaggagtcgcgtcagcaggaggaggagcaggaagtgcagcaagaggagcaattgggagcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07984
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14227988|gb|BG846804.1|BG846804
EST:     TCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAG                         GTCCGCATGGTGGCTCAGGAGCACCTCAACCGCTACACCAGCTTCTTCGAC
genomic: TCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAGgtaggtggag ... gtgcccccagGTCCGCATGGTGGCTCAGGAGCACCTCAACCGCTACACCAGCTCCTTCGAC
EST: gi|23363648|gb|BU651468.1|BU651468
EST:     TCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAG                         GTCCGCATGGTGGCTCAGGAGCACCTCAACCGCTACACCAGCTCCTTCGAC
genomic: TCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAGgtaggtggag ... gtgcccccagGTCCGCATGGTGGCTCAGGAGCACCTCAACCGCTACACCAGCTCCTTCGAC
EST: gi|22072401|gb|BQ821739.1|BQ821739
EST:     TCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAG                         GTCCGCATGGTGGCTCAGGAGCACCTCAACCGCTACACCAGCTCCTTCGAC
genomic: TCAGCGGTGTGTGCGAGAGCCTGGGCTTCGCGCCGTTCCAGGTCATCAAGgtaggtggag ... gtgcccccagGTCCGCATGGTGGCTCAGGAGCACCTCAACCGCTACACCAGCTCCTTCGAC