1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGTGCCGAGGAGGAGGCCAACTGGCACAAGGCCTGCGCCGAGTACAAGGCCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgtggccctggtggcatcttgatgcattaggctgttttgggtctgttggcccggaagctcaatgcaatatgggtctgaacggagtgggcgccgccaactccgttcagggctgctagtcccaaatctgtacaggacatttacccgctcctcgcttttgcctaatcacttttgcctctcgcccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP06856 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10789657|gb|AV627022.1|AV627022
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|49462820|gb|BP090733.1|BP090733
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|22074316|gb|BQ823396.1|BQ823396
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|6546900|gb|AV392684.1|AV392684
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|34991867|gb|CF565784.1|CF565784
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10782404|gb|AV639084.1|AV639084
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGEST: gi|49468760|gb|BP096621.1|BP096621
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|49462167|gb|BP090080.1|BP090080
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: GGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10776290|gb|AV632970.1|AV632970
genomic: GGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10785454|gb|AV642126.1|AV642126
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10785565|gb|AV642237.1|AV642237
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: TTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10784359|gb|AV641031.1|AV641031
genomic: TTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: GCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|49470781|gb|BP098642.1|BP098642
genomic: GCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|7687535|gb|AW758181.1|AW758181
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|10776564|gb|AV633244.1|AV633244
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: GACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGEST: gi|49470064|gb|BP097925.1|BP097925
genomic: GACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGCCGAGGAGGAGGCCAACTGGCACAAGGCCTGCGCCGAGTACAAGGCCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgtggccctggtggcatcttgatgcattaggctgttttgggtctgttggcccggaagctcaatgcaatatgggtctgaacggagtgggcgccgccaactccgttcagggctgctagtcccaaatctgtacaggacatttacccgctcctcgcttttgcctaatcacttttgcctctcgcccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC